CCN 2022 Workshop on Calcium & Voltage Imaging Analysis
from
Thursday, June 2, 2022 (7:00 AM)
to
Friday, June 3, 2022 (5:00 PM)
Monday, May 30, 2022
Tuesday, May 31, 2022
Wednesday, June 1, 2022
Thursday, June 2, 2022
7:00 AM
Breakfast
Breakfast
7:00 AM - 8:00 AM
Room: 4th Floor Pantry/4-Simons Foundation
8:00 AM
Introduction to workshop
-
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
Introduction to workshop
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
8:00 AM - 8:15 AM
Room: 4th Floor Classroom/4-Simons Foundation
8:15 AM
Python in colab
-
Kushal Kolar
(
Doctoral Candidate in Neuroscience, UNC Chapel Hill
)
Eric Thomson
(
NIEHS
)
Python in colab
Kushal Kolar
(
Doctoral Candidate in Neuroscience, UNC Chapel Hill
)
Eric Thomson
(
NIEHS
)
8:15 AM - 10:00 AM
Room: 4th Floor Classroom/4-Simons Foundation
10:00 AM
Coffee Break
Coffee Break
10:00 AM - 10:15 AM
Room: 4th Floor Pantry/4-Simons Foundation
10:15 AM
PCA+NMF+Optimization
-
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
PCA+NMF+Optimization
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
10:15 AM - 11:15 AM
Room: 4th Floor Classroom/4-Simons Foundation
11:15 AM
Using CaImAn Batch
-
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
Using CaImAn Batch
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
11:15 AM - 12:00 PM
Room: 4th Floor Classroom/4-Simons Foundation
12:00 PM
Lunch
Lunch
12:00 PM - 1:00 PM
Room: 3rd Floor Conference Room/3-Simons Foundation
1:00 PM
CNMFE
-
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
CNMFE
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
1:00 PM - 1:20 PM
Room: 4th Floor Classroom/4-Simons Foundation
1:20 PM
CaImAn Online
-
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
CaImAn Online
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
1:20 PM - 1:50 PM
Room: 4th Floor Classroom/4-Simons Foundation
1:50 PM
Coffee Break & Help Installing Mesmerize
Coffee Break & Help Installing Mesmerize
1:50 PM - 2:30 PM
Room: 4th Floor Classroom/4-Simons Foundation
2:30 PM
Mesmerize: Viewer Work Environment
-
Kushal Kolar
(
Doctoral Candidate in Neuroscience, UNC Chapel Hill
)
Mesmerize: Viewer Work Environment
Kushal Kolar
(
Doctoral Candidate in Neuroscience, UNC Chapel Hill
)
2:30 PM - 3:00 PM
Room: 4th Floor Classroom/4-Simons Foundation
3:00 PM
Mesmerize Interface with CaImAn
Mesmerize Interface with CaImAn
3:00 PM - 3:30 PM
Room: 4th Floor Classroom/4-Simons Foundation
3:30 PM
Mesmerize Hands-On: Batch Management
-
Kushal Kolar
(
Doctoral Candidate in Neuroscience, UNC Chapel Hill
)
Mesmerize Hands-On: Batch Management
Kushal Kolar
(
Doctoral Candidate in Neuroscience, UNC Chapel Hill
)
3:30 PM - 4:30 PM
Room: 4th Floor Classroom/4-Simons Foundation
4:30 PM
Coffee Break
Coffee Break
4:30 PM - 4:45 PM
Room: 4th Floor Pantry/4-Simons Foundation
4:45 PM
Mesmerize Hands-On (continued)
-
Kushal Kolar
(
Doctoral Candidate in Neuroscience, UNC Chapel Hill
)
Mesmerize Hands-On (continued)
Kushal Kolar
(
Doctoral Candidate in Neuroscience, UNC Chapel Hill
)
4:45 PM - 5:00 PM
Room: 4th Floor Classroom/4-Simons Foundation
5:00 PM
Processing Outputs of Mesmerize in Jupyter; Downstream Analysis in Jupyter
-
Eric Thomson
(
Bioinformatics Scientist, NIH
)
Processing Outputs of Mesmerize in Jupyter; Downstream Analysis in Jupyter
Eric Thomson
(
Bioinformatics Scientist, NIH
)
5:00 PM - 6:30 PM
Room: 4th Floor Classroom/4-Simons Foundation
6:30 PM
Dinner
Dinner
6:30 PM - 8:00 PM
Room: 3rd Floor Conference Room/3-Simons Foundation
Friday, June 3, 2022
7:00 AM
Breakfast
Breakfast
7:00 AM - 8:00 AM
Room: 4th Floor Pantry/4-Simons Foundation
8:00 AM
CaImAn Volpy
-
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
CaImAn Volpy
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
8:00 AM - 8:50 AM
Room: 4th Floor Classroom/4-Simons Foundation
8:50 AM
CaImAn FIOLA
-
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
CaImAn FIOLA
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
8:50 AM - 9:45 AM
Room: 4th Floor Classroom/4-Simons Foundation
9:45 AM
Coffee Break
Coffee Break
9:45 AM - 10:00 AM
Room: 4th Floor Pantry/4-Simons Foundation
10:00 AM
Best Practices for CaImAn
Best Practices for CaImAn
10:00 AM - 10:30 AM
Room: 4th Floor Classroom/4-Simons Foundation
Work on Analysis of Your Own Data
Work on Analysis of Your Own Data
10:00 AM - 12:00 PM
Room: 4th Floor Classroom/4-Simons Foundation
10:30 AM
Mesmerize Data Structures
Mesmerize Data Structures
10:30 AM - 11:00 AM
Room: 4th Floor Classroom/4-Simons Foundation
11:00 AM
Walthrough Examples of How to Contribute
Walthrough Examples of How to Contribute
11:00 AM - 12:00 PM
Room: 4th Floor Classroom/4-Simons Foundation
12:00 PM
Lunch
Lunch
12:00 PM - 12:30 PM
Room: 3rd Floor Conference Room/3-Simons Foundation
12:30 PM
Hackathon
Hackathon
12:30 PM - 4:30 PM
Room: 4th Floor Classroom/4-Simons Foundation
Bring Your Own Data
Bring Your Own Data
12:30 PM - 4:30 PM
Room: 4th Floor Classroom/4-Simons Foundation
4:30 PM
Full Group Wrap-Up
-
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
Full Group Wrap-Up
Andrea Giovannucci
(
Assistant Professor of Neural Engineering, UNC Chapel Hill/NC State University
)
4:30 PM - 5:00 PM
Room: 4th Floor Classroom/4-Simons Foundation