Name: 3rd Workshop on Statistical and Algorithmic Challenges in Microbiome Data Analysis
Start: 2019-04-01T08:00:00-04:00
End: 2019-04-02T21:35:00-04:00
Location: Simons Foundation

3rd Workshop on Statistical and Algorithmic Challenges in Microbiome Data Analysis

from Monday, April 1, 2019 (8:00 AM) to Tuesday, April 2, 2019 (9:35 PM)

Monday, April 1, 2019

8:00 AM Breakfast
Breakfast
8:00 AM - 8:45 AM
Room: Gerald D. Fischbach Auditorium

8:45 AM Welcome Remarks by Eric Alm and Rich Bonneau
Welcome Remarks by Eric Alm and Rich Bonneau
8:45 AM - 9:00 AM

9:00 AM Embracing Ambiguity In The Taxonomic Classification Of Microbiome Sequencing Data
Embracing Ambiguity In The Taxonomic Classification Of Microbiome Sequencing Data
9:00 AM - 9:25 AM
Room: Nidhi Shah

9:25 AM Metagenomics Strain Resolution On Assembly Graphs
Metagenomics Strain Resolution On Assembly Graphs
9:25 AM - 9:50 AM
Room: Christopher Quince

9:50 AM Pangenome Graph Structures Reveal More Genetic Variation Between Divergent Genomes
Pangenome Graph Structures Reveal More Genetic Variation Between Divergent Genomes
9:50 AM - 10:15 AM
Room: Rachel Colquhoun

10:15 AM Multi-Resolution Phylogenetic Analysis Of Known And Unexplored Members Of The Human Microbiome With PhyloPhlAn2
Multi-Resolution Phylogenetic Analysis Of Known And Unexplored Members Of The Human Microbiome With PhyloPhlAn2
10:15 AM - 10:40 AM
Room: Francesco Asnicar

10:40 AM Break
Break
10:40 AM - 10:55 AM
Room: Gerald D. Fischbach Auditorium

10:55 AM Environmental Selection Of Butyrate Producers Drives Genetic But Not Species Convergence
Environmental Selection Of Butyrate Producers Drives Genetic But Not Species Convergence
10:55 AM - 11:20 AM
Room: Anni Zhang

11:20 AM Spatial Metagenomic Characterization Of Microbial Biogeography In The Gut
Spatial Metagenomic Characterization Of Microbial Biogeography In The Gut
11:20 AM - 11:45 AM
Room: Ravi Sheth

11:45 AM Challenges And Approaches To System-Level Investigation In The HIV-Associate Microbiome And Metabolic Health
Challenges And Approaches To System-Level Investigation In The HIV-Associate Microbiome And Metabolic Health
11:45 AM - 12:10 PM
Room: Abigail Armstrong

12:10 PM Meta-Analysis Of Colorectal Cancer Metagenomics Studies Reveals Robust Microbial Biomarkers
Meta-Analysis Of Colorectal Cancer Metagenomics Studies Reveals Robust Microbial Biomarkers
12:10 PM - 12:35 PM
Room: Jakob Wirbel

12:35 PM Lunch
Lunch
12:35 PM - 1:50 PM
Room: Gerald D. Fischbach Auditorium

1:50 PM FEAST: Fast Expectation-Maximization For Microbial Source Tracking
FEAST: Fast Expectation-Maximization For Microbial Source Tracking
1:50 PM - 2:15 PM
Room: Liat Shenhav

2:15 PM Controlling For Spurious Associations In Case-Control Microbiome Studies
Controlling For Spurious Associations In Case-Control Microbiome Studies
2:15 PM - 2:40 PM
Room: Rajita Menon

2:40 PM Structural Variation In The Gut Microbiome Associates With Host Health
Structural Variation In The Gut Microbiome Associates With Host Health
2:40 PM - 3:05 PM
Room: Tal Korem

3:05 PM Methods For Statistical Inference With Predicted Outcome Data
Methods For Statistical Inference With Predicted Outcome Data
3:05 PM - 3:30 PM
Room: Siruo Wang

3:30 PM Break
Break
3:30 PM - 3:45 PM
Room: Gerald D. Fischbach Auditorium

3:45 PM Computational Non-Ribosomal Peptide Antibiotic Discovery: Metabolomics Meets Microbiome
Computational Non-Ribosomal Peptide Antibiotic Discovery: Metabolomics Meets Microbiome
3:45 PM - 4:10 PM
Room: Bahar Behsaz

4:10 PM Discovering Novel Small Molecules From Microbial Communities By Integrating Computational Mass Spectrometry And Metagenome Mining
Discovering Novel Small Molecules From Microbial Communities By Integrating Computational Mass Spectrometry And Metagenome Mining
4:10 PM - 4:35 PM
Room: Hosein Mohimani

4:35 PM Learning Accurate Representations Of Microbe-Metabolite Interactions
Learning Accurate Representations Of Microbe-Metabolite Interactions
4:35 PM - 5:00 PM
Room: Jamie Morton

5:00 PM Break
Break
5:00 PM - 5:10 PM
Room: Gerald D. Fischbach Auditorium

5:10 PM A Machine Learning Framework Reveals Common Molecular Interactions Between Gut Microbiome And Host Genes Across Human Disease States
A Machine Learning Framework Reveals Common Molecular Interactions Between Gut Microbiome And Host Genes Across Human Disease States
5:10 PM - 5:35 PM
Room: Sambhawa Priya

5:35 PM Geometric Deep Learning Methods For Large-Scale Structure-Based Function Prediction Of Microbial Proteins
Geometric Deep Learning Methods For Large-Scale Structure-Based Function Prediction Of Microbial Proteins
5:35 PM - 6:00 PM
Room: Vladimir Gligorijevic

6:00 PM The Second Round Of CAMI Challenges
The Second Round Of CAMI Challenges
6:00 PM - 6:25 PM
Room: Andreas Bremges

6:25 PM Poster Session and Cocktail Reception
Poster Session and Cocktail Reception
6:25 PM - 8:30 PM
Room: Gerald D. Fischbach Auditorium
Tuesday, April 2, 2019

8:00 AM Breakfast
Breakfast
8:00 AM - 8:45 AM
Room: Gerald D. Fischbach Auditorium

8:45 AM Opening Remarks by Rob Knight
Opening Remarks by Rob Knight
8:45 AM - 9:00 AM

9:00 AM A Scale Normalization Strategy For The Correction Of Compositional Bias In Sparse Sequencing Count Data
A Scale Normalization Strategy For The Correction Of Compositional Bias In Sparse Sequencing Count Data
9:00 AM - 9:25 AM
Room: Senthil Kumar Muthiah

9:25 AM Bayesian Inference For Removing Contamination In Microbiome Studies
Bayesian Inference For Removing Contamination In Microbiome Studies
9:25 AM - 9:50 AM
Room: Pratheepa Jeganathan

9:50 AM Consistent And Correctable Bias In Metagenomic Sequencing Measurements
Consistent And Correctable Bias In Metagenomic Sequencing Measurements
9:50 AM - 10:15 AM
Room: Benjamin Callahan

10:15 AM A Probabilistic Compositional Effect Size Metric For Use In Microbiome Datasets
A Probabilistic Compositional Effect Size Metric For Use In Microbiome Datasets
10:15 AM - 10:40 AM
Room: Greg Gloor

10:40 AM Break
Break
10:40 AM - 11:00 AM
Room: Gerald D. Fischbach Auditorium

11:00 AM Detecting and Correcting for Differential Detection Effects in 16S Data
Detecting and Correcting for Differential Detection Effects in 16S Data
11:00 AM - 11:25 AM
Room: David Clausen

11:25 AM Phylofactorization - Identifying Lineages Of Interest In Microbiome Datasets
Phylofactorization - Identifying Lineages Of Interest In Microbiome Datasets
11:25 AM - 11:50 AM
Room: Alex Washburne

11:50 AM Selbal: An R Package For The Identification Of Microbial Signatures
Selbal: An R Package For The Identification Of Microbial Signatures
11:50 AM - 12:15 PM
Room: Javier Rivera-Pinto

12:15 PM Balance Regression In Microbiome Studies Using Stochastic Search
Balance Regression In Microbiome Studies Using Stochastic Search
12:15 PM - 12:40 PM
Room: Lu Huang

12:40 PM Weighted Kernel Machine Regression For Microbiome Compositional Data Analysis
Weighted Kernel Machine Regression For Microbiome Compositional Data Analysis
12:40 PM - 1:05 PM
Room: M. Luz Calle

1:05 PM Lunch
Lunch
1:05 PM - 2:20 PM
Room: Gerald D. Fischbach Auditorium

2:20 PM Challenges In The Analyses Of Multidomain Longitudinal Data: Layered Solutions.
Challenges In The Analyses Of Multidomain Longitudinal Data: Layered Solutions.
2:20 PM - 3:00 PM
Room: Susan P. Holmes

3:00 PM Near-Causal Inference With Time-Ordered Association Testing For Multiomic Time Series
Near-Causal Inference With Time-Ordered Association Testing For Multiomic Time Series
3:00 PM - 3:25 PM
Room: Christian Diener

3:25 PM A Generic Multivariate Framework For The Integration Of Microbiome Longitudinal Studies With Other Data Types
A Generic Multivariate Framework For The Integration Of Microbiome Longitudinal Studies With Other Data Types
3:25 PM - 3:50 PM
Room: Antonie Bodein

3:50 PM Break
Break
3:50 PM - 4:10 PM
Room: Gerald D. Fischbach Auditorium

4:10 PM A Bayesian, Probabilistic Method For Analyzing Multinomially Distributed Data.
A Bayesian, Probabilistic Method For Analyzing Multinomially Distributed Data.
4:10 PM - 4:35 PM
Room: Joshua Harrison

4:35 PM Joint Modeling Of Longitudinal Microbiome And Time-To-Event Data With Application To A Type I Diabetes Study
Joint Modeling Of Longitudinal Microbiome And Time-To-Event Data With Application To A Type I Diabetes Study
4:35 PM - 5:00 PM
Room: Jiyuan Hu

5:00 PM Scalable Bayesian Multinomial Logistic-Normal Models For The Analysis Of Microbiome Data
Scalable Bayesian Multinomial Logistic-Normal Models For The Analysis Of Microbiome Data
5:00 PM - 5:25 PM
Room: Justin Silverman

5:25 PM Break
Break
5:25 PM - 5:35 PM
Room: Gerald D. Fischbach Auditorium

5:35 PM Robust And Scalable Models Of Microbiome Dynamics
Robust And Scalable Models Of Microbiome Dynamics
5:35 PM - 6:00 PM
Room: Travis Gibson

6:00 PM Elucidating Microbial Spatiotemporal Dynamics With Compositional Tensor Factorization
Elucidating Microbial Spatiotemporal Dynamics With Compositional Tensor Factorization
6:00 PM - 6:25 PM
Room: Cameron Martino

6:25 PM QIIME 2 Enables Robust And Reproducible Bioinformatics
QIIME 2 Enables Robust And Reproducible Bioinformatics
6:25 PM - 6:50 PM
Room: Evan Bolyen

6:50 PM Closing Remarks by Eric Alm, Rich Bonneau & Rob Knight
Closing Remarks by Eric Alm, Rich Bonneau & Rob Knight
6:50 PM - 7:00 PM

7:00 PM Cocktail Reception
Cocktail Reception
7:00 PM - 9:35 PM
Room: Gerald D. Fischbach Auditorium